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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6438968 chr3:125798685 G/A ROPN1 chr3:123687368-123711025:- -0.33 -6.08 2.49E-9 Box Plot
THCA rs6443195 chr3:8601334 C/T FIP1L1 chr4:54243810-54327028:+ -0.3 -6.35 5.12E-10 Box Plot
THCA rs6443195 chr3:8601334 C/T PRPF38B chr1:109234945-109244425:+ -0.23 -6.53 1.64E-10 Box Plot
THCA rs6443745 chr3:181278376 T/G SMUG1 chr12:54515061-54582792:- -0.26 -5.97 4.67E-9 Box Plot
THCA rs6449782 chr5:49587528 G/T LOC647121 chr1:121260910-121313686:+ -0.37 -8.04 6.94E-15 Box Plot
THCA rs6450108 chr5:49730261 T/C LOC647121 chr1:121260910-121313686:+ 0.37 7.92 1.67E-14 Box Plot
THCA rs6450134 chr5:49766955 C/T LOC647121 chr1:121260910-121313686:+ -0.37 -7.9 2.0E-14 Box Plot
THCA rs6450164 chr5:49798648 C/T LOC647121 chr1:121260910-121313686:+ -0.37 -7.92 1.67E-14 Box Plot
THCA rs6450532 chr5:59120851 C/T MTA3 chr2:42721709-42984087:+ -0.29 -6.12 2.0E-9 Box Plot
THCA rs6451801 chr5:45439433 G/A LOC647121 chr1:121260910-121313686:+ 0.35 7.37 7.75E-13 Box Plot
THCA rs6451802 chr5:45441027 C/G LOC647121 chr1:121260910-121313686:+ 0.34 7.07 5.68E-12 Box Plot
THCA rs6451804 chr5:45492205 A/G LOC647121 chr1:121260910-121313686:+ 0.35 7.44 4.63E-13 Box Plot
THCA rs6451807 chr5:45534423 C/G LOC647121 chr1:121260910-121313686:+ 0.36 7.62 1.38E-13 Box Plot
THCA rs6451810 chr5:45634000 T/G LOC647121 chr1:121260910-121313686:+ 0.38 8.1 4.5E-15 Box Plot
THCA rs6451812 chr5:45692308 C/T LOC647121 chr1:121260910-121313686:+ 0.38 8.19 2.47E-15 Box Plot